xenopuslaevisENZYME2PROBE   package:xenopuslaevis   R Documentation

_M_a_p _B_e_t_w_e_e_n _E_n_z_y_m_e _C_o_m_m_i_s_s_i_o_n _N_u_m_b_e_r_s _a_n_d _M_a_n_u_f_a_c_t_u_r_e_r _I_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     xenopuslaevisENZYME2PROBE is an R environment that maps Enzyme
     Commission (EC) numbers to manufacturer identifiers.

_D_e_t_a_i_l_s:

     Each EC number maps to a named vector containing all of the
     manufacturer identifiers that correspond to the gene that produces
     that enzyme. The name of the vector corresponds to the EC number.

     Enzyme Commission numbers are assigned by the Nomenclature
     Committee of the International Union of Biochemistry and Molecular
     Biology <URL: http://www.chem.qmw.ac.uk/iubmb/enzyme/> to allow
     enzymes to be identified. 

     An Enzyme Commission number is of the format EC x.y.z.w, where x,
     y, z, and w are numeric numbers. In xenopuslaevisENZYME2PROBE, EC
     is dropped from the Enzyme Commission numbers.

     Enzyme Commission numbers have corresponding names that describe
     the functions of enzymes in such a way that EC x is a more general
     description than EC x.y that in turn is a more general description
     than EC x.y.z. The top level EC numbers and names are listed
     below:

     EC 1 oxidoreductases

     EC 2 transferases

     EC 3 hydrolases

     EC 4 lyases

     EC 5 isomerases

     EC 6 ligases

     The EC name for a given EC number can be viewed at <URL:
     http://www.chem.qmul.ac.uk/iupac/jcbn/index.html#6> 

     Mappings were based on data provided by:

     KEGG:\<URL:
     ftp://ftp.genome.ad.jp/pub/kegg/release/current/pathway.tar.gz>.
     Built: Release 43.0, July 1, 2007

     Package built Wed Aug 29 14:47:40 2007

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.genome.ad.jp/pub/kegg/pathways>

_E_x_a_m_p_l_e_s:

         # Convert to a list
         xx <- as.list(xenopuslaevisENZYME2PROBE)
        if(length(xx) > 0){
            # Gets the probe identifiers for the first five enzyme
            #commission numbers
            xx[1:5]
            # Get the first one
            xx[[1]]
         }

