agARACYC                 package:ag                 R Documentation

_M_a_p_p_i_n_g_s _b_e_t_w_e_e_n _p_r_o_b_e _i_d_e_n_t_i_f_i_e_r_s _a_n_d _K_E_G_G _p_a_t_h_w_a_y _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     AraCyc <URL: http://www.arabidopsis.org/tools/aracyc/> maintains
     pathway data for Arabidopsis thaliana. agARACYC maps probe
     identifiers to the common names of the pathways in which the genes
     represented by the probe identifiers are involved. Information is
     obtained from AraCyc.

_D_e_t_a_i_l_s:

     Package built Fri Aug 24 17:42:16 2007

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ad.jp/kegg/>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(agARACYC)
         # Remove probe identifiers that do not map to any pathway id
         xx <- xx[!is.na(xx)]
         if(length(xx) > 0){
             # The pathway identifiers for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
         } 

