DataSet-class           DataSet - class
Simon                   Dataset: Little fragment of a microarray from
                        IFC UNAM
Spot-class              Spot - class
WT.dataset              Microarray from the IFC
Zscore                  Z-scores for identifying differential
                        expression
Zscore.plot             Z-score Data Visualization: R vs I or M vs A
Zscore.points           Z-score Window
a.arise                 A Arise
alter.unique            Remove Duplicates
analysis.window         Analysis.window
annotations             Gene Annotations
bg.correct              Background Correction
classes                 Classes Defined by this Package
create.project          create.project
cys.plot                Data Visualization: Cy3 vs Cy5
filter.spot             Intensity-based filtering of array elements
genArise                GUI: Graphical User Interface
genArise.init           genArise.init
genMerge                genMerge: Post-Genomic Analysis
get.values              Auxiliar function for post-analysis
get.Zscore		Swap from Files
global.norm             Global Normalization of Spot
graphic.choose          Graphic choose
grid.norm               Normalization by grid of Spot
help                    Help of genArise
i.arise                 I Arise
imageLimma              Image Plot of Microarray
m.arise                 M Arise
ma.plot                 Data Visualization: M vs. A plot
make.swap		Swap analysis
meanUnique              Remove Duplicates
new.project             new.project
note                    note
old.project             Open previous project
post.analysis           Set-combinatorial analysis
principal               Principal window of genAriseGUI
projects.select         File selector
r.arise                 Get R value
read.dataset            Read Dataset from File
read.spot               Read Spot from File
reset.history           Reset the prj history file
ri.plot                 Data Visualization: R vs I
set.grid.properties     set.grid.properties
set.history.project     Save the history of a project
set.path.project        set path project
set.project.properties	Set project properties
single.norm		Individual analysis for both files of swap
spotUnique              Replicate filtering
swap.select		Dye swap files selector
trim                    Trim
write.dataSet           Write dataSet
write.spot              Write Spot
write.zscore            Write Z-score data
