import(Biobase, oligoClasses, methods)
exportClasses(ParESet,
              ParSnpCopyNumberSet,
              ParSnpCallSet,
              ParSnpSet)

exportMethods(getSnpAnnotation,
              alleleA,
              alleleB,
              calculateCopyNumber,              
              chromosome,
              coerce,
              dbSnpId,
              enzyme,
              fragmentLength,
              initialize,
              position,
              selectSomeIndex,  
              show,
              smoothSnp,
              summary,
              updateObject,
              unsplitSnpSet)

export(centromere,
       chromosomeSize,
       showSummary)


##par class methods
exportMethods("$",
              "$<-",
              allPlots,
              getPar,
              plotSnp,              
              snpPar,
              "snpPar<-")              
export(plotCytoband, .calculateYlim)

##DEPRECATED CLASSES
exportClasses(AnnotatedSnpSet,
              AnnotatedSnpCopyNumberSet,
              AnnotatedSnpCallSet)
              
