plotCytoband             package:SNPchip             R Documentation

_P_l_o_t_s _c_y_t_o_b_a_n_d _f_o_r _o_n_e _c_h_r_o_m_o_s_o_m_e

_D_e_s_c_r_i_p_t_i_o_n:

     Adds cytobands to views of chromosome copy number and genotype
     plots.

_U_s_a_g_e:

     plotCytoband(chromosome, cytoband, xlim, xaxs="r", new=TRUE,
     label.cytoband=TRUE, cex.axis=1, outer=FALSE, ...)

_A_r_g_u_m_e_n_t_s:

chromosome: character string: which chromosome to draw the cytoband

cytoband: data.frame containing cytoband information

    xlim: axis limits

    xaxs: see par

     new: logical: if TRUE, plots the cytoband on a new device

label.cytoband: logical: if TRUE, labels the cytobands

cex.axis: size of cytoband labels. See par

   outer: logical: whether to draw the labels in the outer margins. See
          par

     ...: additional arguments to plot

_D_e_t_a_i_l_s:

     This function is meant to primarily be called by plotSnp and
     displayed beneath copy number and genotype estimates.

_V_a_l_u_e:

_A_u_t_h_o_r(_s):

     Robert Scharpf and Jason Ting

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'plotSnp', 'cytoband', 'par', 'plot'

_E_x_a_m_p_l_e_s:

     plotCytoband("1")

