Entry: GetLMObj
Aliases: GetLMObj
Keywords: math
Description: Function to get a simple lm object for a regression on the relevant model.
URL: ../../../library/LMGene/html/GetLMObj.html

Entry: LMGene
Aliases: LMGene
Keywords: models
Description: LMGene main function
URL: ../../../library/LMGene/html/LMGene.html

Entry: genediff
Aliases: genediff
Keywords: models
Description: Raw p-value calculation function
URL: ../../../library/LMGene/html/genediff.html

Entry: glog
Aliases: glog
Keywords: math
Description: Generalized log transformation function
URL: ../../../library/LMGene/html/glog.html

Entry: jggrad2
Aliases: jggrad2
Keywords: math
Description: Generating Jacobian-corrected data
URL: ../../../library/LMGene/html/jggrad2.html

Entry: jglog
Aliases: jglog
Keywords: math
Description: Glog
URL: ../../../library/LMGene/html/jglog.html

Entry: lnorm
Aliases: lnorm
Keywords: math
Description: Lowess normalization function
URL: ../../../library/LMGene/html/lnorm.html

Entry: lnormeS
Aliases: lnormeS
Keywords: math
Description: Function to apply lowessnorm to a transformed expression set. Returns the normalized expression set.
URL: ../../../library/LMGene/html/lnormeS.html

Entry: mlm2lm
Aliases: mlm2lm
Keywords: models
Description: Linear Model converting function
URL: ../../../library/LMGene/html/mlm2lm.html

Entry: msa
Aliases: msa
Keywords: math
Description: Relative mean square calculation function
URL: ../../../library/LMGene/html/msa.html

Entry: msecalc
Aliases: msecalc
Keywords: math
Description: MSE calculation function
URL: ../../../library/LMGene/html/msecalc.html

Entry: msecalcmult
Aliases: msecalcmult
Keywords: math
Description: MSE calculation function
URL: ../../../library/LMGene/html/msecalcmult.html

Entry: neweS
Aliases: neweS
Keywords: manip
Description: Coercing to exprSet function
URL: ../../../library/LMGene/html/neweS.html

Entry: norm
Aliases: norm
Keywords: math
Description: Additive normalization function
URL: ../../../library/LMGene/html/norm.html

Entry: psmeans
Aliases: psmeans
Keywords: math
Description: Function to take means of probesets.
URL: ../../../library/LMGene/html/psmeans.html

Entry: pvadjust
Aliases: pvadjust
Keywords: models
Description: P-value adjusting function
URL: ../../../library/LMGene/html/pvadjust.html

Entry: rowaov
Aliases: rowaov
Keywords: models
Description: Gene by gene anova functioin
URL: ../../../library/LMGene/html/rowaov.html

Entry: rowlist
Aliases: rowlist
Keywords: manip
Description: Gene name listing function
URL: ../../../library/LMGene/html/rowlist.html

Entry: sample.eS
Aliases: sample.eS
Keywords: datasets
Description: Sample array data for LMGene
URL: ../../../library/LMGene/html/sample.eS.html

Entry: sample.ind
Aliases: sample.ind
Keywords: datasets
Description: Sample probeset index vector
URL: ../../../library/LMGene/html/sample.ind.html

Entry: sample.mat
Aliases: sample.mat
Keywords: datasets
Description: Sample array data for LMGene package
URL: ../../../library/LMGene/html/sample.mat.html

Entry: tranest
Aliases: tranest
Keywords: math
Description: Glog transformation parameter estimation function
URL: ../../../library/LMGene/html/tranest.html

Entry: tranest2
Aliases: tranest2
Keywords: math
Description: Glog transformation parameter estimation function 2
URL: ../../../library/LMGene/html/tranest2.html

Entry: tranestmult
Aliases: tranestmult
Keywords: math
Description: Glog transformation parameter estimation function for multiple parameters
URL: ../../../library/LMGene/html/tranestmult.html

Entry: transeS
Aliases: transeS
Keywords: math
Description: Function to apply the glog transform to an expression set. Returns the transformed expression set (not normalized).
URL: ../../../library/LMGene/html/transeS.html

Entry: vlist
Aliases: vlist
Keywords: datasets
Description: Sample experimental data for LMGene package
URL: ../../../library/LMGene/html/vlist.html
