sliceSegment              package:GeneR              R Documentation

_d_e_l_i_n_e_a_t_e _s_u_b-_s_e_g_m_e_n_t_s _o_f _e_q_u_a_l _s_i_z_e _a_t _b_o_t_h _s_i_d_e_s _o_f _a_n _o_r_i_g_i_n
_i_n _a _s_e_g_m_e_n_t

_D_e_s_c_r_i_p_t_i_o_n:

     delineate sub-segments of equal size at both sides of an origin in
     a segment

_U_s_a_g_e:

     sliceSegment(from = 1, to = 0, ori = 0, nbinL = 0, nbinR = 0, size = 1)

_A_r_g_u_m_e_n_t_s:

    from: integer, position of the begin of segment

      to: integer, position of the end of segment

     ori: integer, the position of the origin

   nbinL: number of sub-segments to create before the origin

   nbinR: number of sub-segments to create after the origin

    size: integer, size of the sub-segments

_V_a_l_u_e:

     an element of class segSet

_A_u_t_h_o_r(_s):

     Yves d'Aubenton and Emna

_S_e_e _A_l_s_o:

     'bankDensityProfile','densityProfile','GCcontent','seqSkew'

_E_x_a_m_p_l_e_s:

       ## If by example we have a gene in positions 150 to 200
       ## This will create segments to study
       ## A more complex example is provided with function densityProfile

       sliceSegment(from=1,to=200,ori=150,nbinL=15,nbinR=15,size=10)

