readEmblDescript            package:GeneR            R Documentation

_R_e_a_d _f_e_a_t_u_r_e_s _f_r_o_m _a_n _E_m_b_l _b_a_n_k _f_i_l_e

_D_e_s_c_r_i_p_t_i_o_n:

     Read features from an Embl bank file

_U_s_a_g_e:

     readEmblDescript(file, name = NA, code = "DE")

_A_r_g_u_m_e_n_t_s:

    file: String/scalar, File name of the bank (example: "foo.embl")

    name: String/scalar, Sequence name (default : first sequence)

    code: String/scalar, feature code to look for (i.e. "CC", "DE",
          "CC", etc...)

_V_a_l_u_e:

     A vector of character string.

_A_u_t_h_o_r(_s):

     Antoine Lucas

_E_x_a_m_p_l_e_s:

     ## Not run: 
     download.file("http://bioinfo.hku.hk/sars/AY291451.seq",
     destfile="AY291451.seq")

     readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="DE")

     ##_returns: "SARS coronavirus TW1, complete genome."

     readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="OC")

     ##_returns: "Viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirus; SARS coronavirus."

     readEmblDescript(file = "AY291451.seq",name ="AY291451",code ="RA")
     ##[1] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"
     ##[2] "Yeh S.-H., Kao C.-L., Tsai C.-Y., Liu C.-J., Chen D.-S., Chen P.-J.;"

     ## End(Not run)

