Entry: ApoA1
Aliases: ApoA1 ApoA1.L
Keywords: datasets
Description: Gene expression dataset from the ApoA1 Experiment
URL: ../../../library/DEDS/html/ApoA1.html

Entry: DEDS-internal
Aliases: deds.checkB deds.checkothers deds.checkclasslabel deds.checkX test.checkX deds.calcFDR deds.calcAdjP deds.next.sample type2test sam.fdr sam.multiclass.func sam.twoclass.func sam.oneclass.func sam.s0 euclidean
Keywords: internal
Description: Internal DEDS functions
URL: ../../../library/DEDS/html/DEDS-internal.html

Entry: affySpikeIn
Aliases: affySpikeIn affySpikeIn.L affySpikeIn.gnames spikedgene
Keywords: datasets
Description: Gene expression dataset from Affymetrix Spike-in Experiments
URL: ../../../library/DEDS/html/affySpikeIn.html

Entry: aggregateFun
Aliases: aggregateFun
Keywords: manip
Description: Aggregate Statistical Functions for DEDS
URL: ../../../library/DEDS/html/aggregateFun.html

Entry: comp.B
Aliases: comp.B
Keywords: univar
Description: Computing B-statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.B.html

Entry: comp.F
Aliases: comp.F
Keywords: univar
Description: Computing F-statistic for Differential Expression
URL: ../../../library/DEDS/html/comp.F.html

Entry: comp.FC
Aliases: comp.FC
Keywords: univar
Description: Computing Fold Change for Differential Expression
URL: ../../../library/DEDS/html/comp.FC.html

Entry: comp.SAM
Aliases: comp.SAM
Keywords: univar
Description: Computing SAM Statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.SAM.html

Entry: comp.adjp
Aliases: comp.adjp
Keywords: univar
Description: Computing permutation based step-down maxT adjusted p values for each row of a matrix
URL: ../../../library/DEDS/html/comp.adjp.html

Entry: comp.ebayes
Aliases: comp.ebayes
Keywords: htest
Description: Computing Empirical Bayes Statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.ebayes.html

Entry: comp.fdr
Aliases: comp.fdr
Keywords: univar
Description: Computing permutation based q values controlling false discovery rate for each row of a matrix
URL: ../../../library/DEDS/html/comp.fdr.html

Entry: comp.modF
Aliases: comp.modF
Keywords: univar
Description: Computing Moderated t-statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.modF.html

Entry: comp.modt
Aliases: comp.modt
Keywords: univar
Description: Computing Moderated t-statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.modt.html

Entry: comp.stat
Aliases: comp.stat
Keywords: univar
Description: Computing Test Statistics for Differential Expression
URL: ../../../library/DEDS/html/comp.stat.html

Entry: comp.t
Aliases: comp.t
Keywords: univar
Description: Computing One and Two Sample t-statistic for Differential Expression
URL: ../../../library/DEDS/html/comp.t.html

Entry: comp.unadjp
Aliases: comp.unadjp
Keywords: univar
Description: Computing permutation based unadjusted p values for each row of a matrix
URL: ../../../library/DEDS/html/comp.unadjp.html

Entry: deds.chooseTest
Aliases: deds.chooseTest
Keywords: univar
Description: Selection of the Most Common Statistics for Differential Expression
URL: ../../../library/DEDS/html/deds.chooseTest.html

Entry: DEDS-class
Aliases: DEDS-class DEDS
Keywords: classes data
Description: DEDS Result List - class
URL: ../../../library/DEDS/html/deds.class.html

Entry: deds.genExtra
Aliases: deds.genExtra
Keywords: manip
Description: Generating Extra Parameters for Test Statistics Functions for Differential Expression
URL: ../../../library/DEDS/html/deds.genExtra.html

Entry: deds.pval
Aliases: deds.pval
Keywords: htest
Description: Differential Expression via Distance Summary of p Values from Multiple Models
URL: ../../../library/DEDS/html/deds.pval.html

Entry: deds.stat
Aliases: deds.stat
Keywords: htest
Description: Differentail Expression via Distance Summary of Multiple Statistics
URL: ../../../library/DEDS/html/deds.stat.html

Entry: deds.stat.linkC
Aliases: deds.stat.linkC
Keywords: htest
Description: Differentail Expression via Distance Summary of Multiple Statistics
URL: ../../../library/DEDS/html/deds.stat.linkC.html

Entry: hist-methods
Aliases: hist.DEDS hist-methods hist
Keywords: hplot
Description: Histogram for DEDS Objects
URL: ../../../library/DEDS/html/hist.DEDS.html

Entry: pairs-methods
Aliases: pairs.DEDS pairs pairs-methods
Keywords: hplot
Description: Pairs Plot for DEDS Objects
URL: ../../../library/DEDS/html/pairs.DEDS.html

Entry: qqnorm-methods
Aliases: qqnorm.DEDS qqnorm-methods qqnorm
Keywords: hplot
Description: Normal Q-Q Plot for DEDS Objects
URL: ../../../library/DEDS/html/qqnorm.DEDS.html

Entry: topgenes
Aliases: topgenes
Keywords: htest
Description: Table of Top Genes from DEDS
URL: ../../../library/DEDS/html/topgenes.html
