\HeaderA{agPATH2PROBE}{Map between Kyoto Encyclopedia of Genes and Genomes (KEGG)
pathway identifiers and Manufacturer Identifiers}{agPATH2PROBE}
\keyword{datasets}{agPATH2PROBE}
\begin{Description}\relax
agPATH2PROBE is an R environment that provides mappings between
KEGG identifiers and manufacturer identifiers.
\end{Description}
\begin{Details}\relax
Each KEGG identifier is mapped to a named vector of manufacturer identifiers. The name
represents the KEGG identifier and the vector contains all manufacturer identifiers
that are found in that particular pathway. An \code{NA} is reported
for any KEGG identifier that cannot be mapped to any manufacturer identifiers.

Pathway name for a given pathway identifier can be obtained using the KEGG
data package that can either be built using AnnBuilder or downloaded
from Bioconductor \url{http://www.bioconductor.org}.

Graphic presentations of pathways are searchable at
\url{http://www.genome.ad.jp/kegg/pathway.html} using pathway identifiers as keys.

Mappings were based on data provided by:

Tair: \bsl{}url{ftp://ftp.arabidopsis.org/home/tair//ath/ath\_gene\_map.tab}
Built: N/A

Tair: \bsl{}url{ftp://ftp.arabidopsis.org/home/tair/Microarrays/Affymetrix/affy\_AG\_array\_elements-2006-07-14.txt}
Tair: \bsl{}url{ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR\_sequenced\_genes}
Tair: \bsl{}url{ftp://ftp.arabidopsis.org/home/tair/User\_Requests/LocusPublished.02022007}
Built: N/A

Package built Thu Mar 15 17:42:16 2007
\end{Details}
\begin{References}\relax
\url{http://www.genome.ad.jp/kegg/}
\end{References}
\begin{Examples}
\begin{ExampleCode}
    # Convert the environment to a list
    xx <- as.list(agPATH2PROBE)
    # Remove pathway identifiers that do not map to any probe id
    xx <- xx[!is.na(xx)]
    if(length(xx) > 0){
        # The probe identifiers for the first two elements of XX
        xx[1:2]
        # Get the first one
        xx[[1]]
    } 
\end{ExampleCode}
\end{Examples}

