pfamSCOP2AC               package:PFAM               R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _S_C_O_P _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from SCOP ID (SCOP) to the associated Accession
     number (AC)

_U_s_a_g_e:

     pfamSCOP2AC(scop=NULL)

_A_r_g_u_m_e_n_t_s:

    scop: A character vector of SCOP ID or NULL (default)

_D_e_t_a_i_l_s:

     If 'scop' is a vector of SCOP ID,  pfamSCOP2AC will return a list
     of associated Accession number for the given 'scop'.  If 'scop' is
     NULL,  pfamSCOP2AC(scop=NULL) (or pfamSCOP2AC()) will return a
     list of associated Accession number for all the SCOP ID in the
     database. Extra information:  None More Details: Structural
     Classification of Proteins (\<URL:
     http://scop.mrc-lmb.cam.ac.uk/scop/index.html>).  Reference:
     Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP:
     a structural classification of proteins database for the
     investigation of sequences and structures. J. Mol. Biol. 247,
     536-540

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         SCOP2AC <- pfamSCOP2AC()
         head(SCOP2AC)
         pfamSCOP2AC(scop=sample(names(SCOP2AC), 3))
     ## End(Not run)

