pfamHOMSTRAD2AC             package:PFAM             R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _H_O_M_S_T_R_A_D _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from HOMSTRAD ID (HOMSTRAD) to the associated
     Accession number (AC)

_U_s_a_g_e:

     pfamHOMSTRAD2AC(homstrad=NULL)

_A_r_g_u_m_e_n_t_s:

homstrad: A character vector of HOMSTRAD ID or NULL (default)

_D_e_t_a_i_l_s:

     If 'homstrad' is a vector of HOMSTRAD ID,  pfamHOMSTRAD2AC will
     return a list of associated Accession number for the given
     'homstrad'.  If 'homstrad' is NULL, 
     pfamHOMSTRAD2AC(homstrad=NULL) (or pfamHOMSTRAD2AC()) will return
     a list of associated Accession number for all the HOMSTRAD ID in
     the database. Extra information:  None More Details: HOMSTRAD
     (HOMologous STRucture Alignment Database, \<URL:
     http://www-cryst.bioc.cam.ac.uk/homstrad/>) is a curated database
     of structure-based alignments for homologous protein families. 
     Reference: Mizuguchi K, Deane CM, Blundell TL, Overington JP.
     (1998) HOMSTRAD: a database of protein structure alignments for
     homologous families. Protein Science 7:2469-2471.

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         HOMSTRAD2AC <- pfamHOMSTRAD2AC()
         head(HOMSTRAD2AC)
         pfamHOMSTRAD2AC(homstrad=sample(names(HOMSTRAD2AC), 3))
     ## End(Not run)

