pfamAC2SCOP               package:PFAM               R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r _t_o _S_C_O_P _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from Accession number (AC) to the associated SCOP
     ID (SCOP)

_U_s_a_g_e:

     pfamAC2SCOP(ac=NULL)

_A_r_g_u_m_e_n_t_s:

      ac: A character vector of Accession number or NULL (default)

_D_e_t_a_i_l_s:

     If 'ac' is a vector of Accession number,  pfamAC2SCOP will return
     a list of associated SCOP ID for the given 'ac'.  If 'ac' is NULL,
      pfamAC2SCOP(ac=NULL) (or pfamAC2SCOP()) will return a list of
     associated SCOP ID for all the Accession number in the database.
     Extra information:  Placement More Details: Structural
     Classification of Proteins (\<URL:
     http://scop.mrc-lmb.cam.ac.uk/scop/index.html>).  Reference:
     Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP:
     a structural classification of proteins database for the
     investigation of sequences and structures. J. Mol. Biol. 247,
     536-540

_V_a_l_u_e:

     A list of SCOP ID.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         AC2SCOP <- pfamAC2SCOP()
         head(AC2SCOP)
         pfamAC2SCOP(ac=sample(names(AC2SCOP), 3))
     ## End(Not run)

