pfamAC2PDB               package:PFAM               R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r _t_o _P_D_B _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from Accession number (AC) to the associated PDB
     ID (PDB)

_U_s_a_g_e:

     pfamAC2PDB(ac=NULL)

_A_r_g_u_m_e_n_t_s:

      ac: A character vector of Accession number or NULL (default)

_D_e_t_a_i_l_s:

     If 'ac' is a vector of Accession number,  pfamAC2PDB will return a
     list of associated PDB ID for the given 'ac'.  If 'ac' is NULL, 
     pfamAC2PDB(ac=NULL) (or pfamAC2PDB()) will return a list of
     associated PDB ID for all the Accession number in the database.
     Extra information:  Start and end points More Details: PDB (\<URL:
     http://www.rcsb.org/pdb/index.html>), the single worldwide
     repository for the processing and distribution of 3-D biological
     macromolecular structure data.  Reference: H.M. Berman, J.
     Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N.
     Shindyalov, P.E. Bourne:  The Protein Data Bank.   Nucleic Acids
     Research  ,  28  pp. 235-242 (2000)

_V_a_l_u_e:

     A list of PDB ID.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         AC2PDB <- pfamAC2PDB()
         head(AC2PDB)
         pfamAC2PDB(ac=sample(names(AC2PDB), 3))
     ## End(Not run)

