runCompIndep          package:simulatorAPMS          R Documentation

_F_u_n_c_t_i_o_n _c_h_e_c_k_s _t_h_e _a_r_g_u_m_e_n_t_s _a_n_d _p_a_r_a_m_e_t_e_r_s _f_o_r
_c_o_m_p_I_n_d_e_p.

_D_e_s_c_r_i_p_t_i_o_n:

     Makes sure that the same set of proteins are used for both each of
     the first two arguments.

_U_s_a_g_e:

     runCompIndep(TSNMat, estMat, intersectMat)

_A_r_g_u_m_e_n_t_s:

  TSNMat: Incidence Matrix for the True State of Nature (TSN) bipartite
          graph

  estMat: Incidence Matrix for the estimate bipartite graph

intersectMat: A matrix of integers: the (i,j)th entry of this matrix is
          the cardinality of the intersection between the i-th complex
          of TSN and the j-th complex of the estimate.

_D_e_t_a_i_l_s:

     See above

_V_a_l_u_e:

     A numeric matrix:

     Matrix that calculates the probablistic independence that a
     protein will be in both complex C-i of the TSN and K-j in the
     estimate.

_A_u_t_h_o_r(_s):

     T. Chiang

_E_x_a_m_p_l_e_s:

     library(simulatorAPMS)
     data(simEX)
     data(APComEX)
     CC = runCompareComplex(simEX, APComEX)
     runCompIndep(simEX, APComEX, CC[[1]])

