recordSticky          package:simulatorAPMS          R Documentation

_T_h_i_s _f_u_n_c_t_i_o_n _r_e_c_o_r_d_s _p_r_o_t_e_i_n_s _k_n_o_w_n _t_o _b_e _s_t_i_c_k_y _i_n _t_h_e _s_i_m_u_l_a_t_i_o_n _o_f _A_P-_M_S.

_D_e_s_c_r_i_p_t_i_o_n:

     In the actual AP-MS technology, sticky proteins are identified and
     then removed from the process so sticky proteins do not influence
     the outcome of the protein-protein co-membership matrix nor the
     estimate from complex composition algorithms such as apComplex.

_U_s_a_g_e:

     recordSticky(simMat, vSticky, vBaits)

_A_r_g_u_m_e_n_t_s:

  simMat: An adjcency matrix: the rows are indexed by bait proteins and
          the colunms are indexed by prey proteins

 vSticky: The pre-determined vector of sticky proteins

  vBaits: A character vector of the proteins used as baits

_D_e_t_a_i_l_s:

     The recordSticky function will return both the sticky proteins
     that are put into the function at the beginning as well as
     proteins which pull down a large number of prey proteins.

_V_a_l_u_e:

     A character vector:

     The return value is a vector of all the proteins that are
     considered to be sticky in the simulation of AP-MS

_A_u_t_h_o_r(_s):

     Tony Chiang

_E_x_a_m_p_l_e_s:

     library(simulatorAPMS)
     data(fullSimEX)
     data(vBaitsEX)
     recordSticky(fullSimEX, c(vBaitsEX[2], vBaitsEX[3]))

