shapeCon-class             package:cosmo             R Documentation

_C_l_a_s_s "_s_h_a_p_e_C_o_n" ~~~

_D_e_s_c_r_i_p_t_i_o_n:

     This class defines a constraint concerning the evolution of the
     information content over an interval

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form '  new('shapeCon','
      '    shape      = ...., # Object of class character'
      '    sLower     = ...., # Object of class numeric'
      '    sUpper     = ...., # Object of class numeric'
      '    eLower     = ...., # Object of class numeric'
      '    eUpper     = ...., # Object of class numeric'
      '    error      = ...., # Object of class numeric'
      '  )' or by: '  makeShapeCon('
      '    shape      = ...., # Object of class character'
      '    sLower     = ...., # Object of class numeric'
      '    sUpper     = ...., # Object of class numeric'
      '    eLower     = ...., # Object of class numeric'
      '    eUpper     = ...., # Object of class numeric'
      '    error      = ...., # Object of class numeric'
      '  )'

_S_l_o_t_s:

     '_s_h_a_p_e': Object of class '"character"' This slot describes how the
          information content varies across the interval: 'Linear', 
          'Monotone Increasing' and 'Monotone Decreasing' are currently
          implemented 

     '_s_L_o_w_e_r': Object of class '"numeric"' starting lower bound 

     '_s_U_p_p_e_r': Object of class '"numeric"' starting upper bound  

     '_e_L_o_w_e_r': Object of class '"numeric"' ending lower bound  

     '_e_U_p_p_e_r': Object of class '"numeric"' ending upper bound   

     '_e_r_r_o_r': Object of class '"numeric"' error tolerated 

_M_e_t_h_o_d_s:

     No methods defined with class "shapeCon" in the signature.

_N_o_t_e:

     ~~further notes~~

_A_u_t_h_o_r(_s):

     Fabian Gallusser, fgallusser@berkeley.edu

_R_e_f_e_r_e_n_c_e_s:

_S_e_e _A_l_s_o:

     'boundCon', 'subMotifCon', 'posFreqCon', 'shapeDiffCon', 'palCon'
     'makeConSet'

_E_x_a_m_p_l_e_s:

     makeShapeCon("Monotone Increasing",sLower=0,sUpper=1,eLower=1.5,eUpper=2,error=0.5)

