dotplotQC {BeadExplorer}R Documentation

Plot a subset of QC dotplots

Description

Plots a series of dotplots for a BeadChip QC data

Usage

dotplotQC(beadData, beadQC, qc, subset, col = NULL, currentcol = "black", meansym = 4, arraysym = 19, currentsym = 19, 
meansize = 1.5, arraysize = 1.5, currentsize = 1.5, ...)

Arguments

beadData Object of class beadData-class
beadQC Object of class beadQC-class
qc data.frame created by readQC
subset A numerical vector, denoting the columns of QC to plot
col A vector of colours used to plot each array type
currentcol The colour used to identify the current analysis
meansym The symbol used to identify the mean
arraysym The symbol used to identify the each analysis
currentsym The symbol used to identify the current analysis
meansize The size of the symbol used to identify the mean
arraysize The size of the symbol used to identify each analysis
currentsize The size of the symbol used to identify the current analysis
... Arguments passed to points

Details

This function is primarily an internal function and should not need to be called by the user. The function is used to plot each indivdual dotplot graph by dotplotArrays.

Value

None

Author(s)

Gareth Elvidge gareth.elvidge@well.ox.ac.uk

See Also

dotplotArrays, boxplotArrays,boxplotQC

Examples

## Not run: 
data(examplebeadData)
data(examplebeadQC)
data(exampleQC)
boxplotQC(examplebeadData, examplebeadQC, exampleQC,subset=c(1,4,3,2))
## End(Not run)
[Package BeadExplorer version 1.2.0 Index]