getPubDataGo           package:AnnBuilder           R Documentation

_F_u_n_c_t_i_o_n_s _t_o _d_o_w_n_l_o_a_d _p_u_b_l_i_c _d_o_m_a_i_n _a_n_n_o_t_a_t_i_o_n _d_a_t_a _s_o_u_r_c_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     These functions are intended to help create a local mirror of
     public domain annotation data sources.  They all depend on having
     wget available.

_U_s_a_g_e:

     getPubDataHomoloGene(baseUrl, passive)
     getPubDataLocusLink(baseUrl, passive)
     getPubDataUniGene(baseUrl, passive)
     getPubDataEntrezGene(baseUrl, passive)
     getPubDataGoldenPath(baseUrl, passive)
     getPubDataGo(baseUrl, passive)
     getPubDataYeastGenome(baseUrl, passive)
     getPubDataKegg(baseUrl, passive)

_A_r_g_u_m_e_n_t_s:

 baseUrl: The URL.  Note that for some sources this is a directory and
          for others it fully specifies a file we want to have
          available.

 passive: logical.  If 'TRUE', pass the '-passive-ftp' flag to 'wget'

_A_u_t_h_o_r(_s):

     Seth Falcon <sfalcon@fhcrc.org>

