KEGGPkgbuilder          package:AnnBuilder          R Documentation

_A _f_u_n_c_t_i_o_n _t_o _m_a_k_e _t_h_e _d_a_t_a _p_a_c_k_a_g_e _f_o_r _K_E_G_G

_D_e_s_c_r_i_p_t_i_o_n:

     This function generates a data package with rda files mapping KEGG
     pathway or enzyme names to ids and vice versa. The source files
     for making the mapping are from the Internet.

_U_s_a_g_e:

     KEGGPkgBuilder(pkgPath, pkgName = "KEGG", version = "1.0.1", author = list(author = "who",maintainer = "who@email.com"))
     getEIdNName(enzymeURL)
     getKEGGFile(whichOne, organism = "hsa")
     getKEGGGeneMap(organism = "Homo sapiens")

_A_r_g_u_m_e_n_t_s:

 pkgPath: A character string for the name of path to which the data
          package will be stored.

 pkgName: A character string for the name of the data package.

 version: A character string for the version number of the system by
          which the data package is generated.

  author: A list of character strings with one element being name for
          the name of the author and another being address being the
          email address of the author

organism: 'organism' a character string for the name of the organism of
          interest

whichOne: A charcter string for the name of file type. Valid values
          include "path" or "enzyme"

enzymeURL: A character string for the URL from which the source file
          for enzyme data will be downloaded.

_D_e_t_a_i_l_s:

     The data package produced will have the normal structure of an R
     package (i. g. with R, man, data, and src directories) under a
     directory defined by pkgName under pkgPath.

_V_a_l_u_e:

     This function does not return any value.

_N_o_t_e:

     This function is part of the Bioconductor project at Dana-Farber
     Cancer Institute to provide Bioinformatics functionalities through
     R.

_A_u_t_h_o_r(_s):

     Jianhua Zhang

_R_e_f_e_r_e_n_c_e_s:

     An Introduction to R - Writting R Extensions.

_S_e_e _A_l_s_o:

     'package.skeleton'

