AASequenceList-class       package:pairseqsim       R Documentation

_C_l_a_s_s "_A_A_S_e_q_u_e_n_c_e_L_i_s_t" - _C_o_n_t_a_i_n_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Container for objects of calss AASequence. The AASequences in the
     list can be accessed and manipulated like normal list elements.

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("AASequenceList",
     ...)'.

_S_l_o_t_s:

     '._D_a_t_a': Object of class '"list"' : list of AASequence objects.

     '_i_n_f_o': Object of class '"character"' : info character

_E_x_t_e_n_d_s:

     Class '"list"', directly.

_M_e_t_h_o_d_s:

     [ 'signature(x = "AASequenceList")': create subset AASequenceList 

     [[<- 'signature(x = "AASequenceList")': assign AASequence

     [<- 'signature(x = "AASequenceList")': replace subset of
          AASequenceList

     _r_e_a_d_F_a_s_t_a 'signature(object = "AASequenceList")': read file in
          FASTA format. 

     _s_a_l_i_g_n 'signature(obj1 = "AASequenceList", obj2 = "NULL")': see:
          'salign'

     _s_a_l_i_g_n 'signature(obj1 = "AASequenceList", obj2 = "AASequence")': 
          see: 'salign' 

     _s_a_l_i_g_n 'signature(obj1 = "AASequence", obj2 = "AASequenceList")': 
          see: 'salign' 

_A_u_t_h_o_r(_s):

     Wolski E. Witold witek96@users.sourceforge.net

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://users.sourceforge.net>

_S_e_e _A_l_s_o:

     'salign-methods', or 'readFasta-methods'

_E_x_a_m_p_l_e_s:

     data(sequlist)
     sequlist[1:2]
     sequlist[[1]]
     sequlist[1:2]<-sequlist[3:4]

