edesignCT              package:maSigPro              R Documentation

_E_x_p_e_r_i_m_e_n_t_a_l _d_e_s_i_g_n _w_i_t_h _a _s_h_a_r_e_d _t_i_m_e

_D_e_s_c_r_i_p_t_i_o_n:

     'edesignCT' contains the experimental set up of a time course
     microarray experiment where there is a common starting point for
     the different experimental groups.

_U_s_a_g_e:

     data(edesignCT)

_F_o_r_m_a_t:

     A matrix with 32 rows and 7 colums

          rows [1:32] "Array1" "Array2" "Array3" "Array4" ... \newline
          columns [1:7] "Time" "Replicates" "Control" "Tissue1"
          "Tissue2" "Tissue3" "Tissue4"

_D_e_t_a_i_l_s:

     Arrays are given in rows and experiment descriptors are given in
     columns. Row names contain array names. \newline '"Time"'
     indicates the values that variable Time takes in each
     hybridization. There are 4 time points, which allows an up to 3
     degree regression polynome. \newline '"Replicates"' is an index
     indicating replicate hyridizations, i.e. hybridizations are
     numbered, giving replicates the same number. \newline '
     "Control"',   '"Tissue1"',   '"Tissue2"',   '"Tissue3"' and  
     '"Tissue4"'  columns indicate array assigment to experimental
     groups, coding with 1 and 0 whether each array belongs to that
     group or not.

_E_x_a_m_p_l_e_s:

     data(edesignCT)

