affxparser-package      Package affxparser
affxparserInfo          Overview of the Affxparser package.
applyCdfGroups          Applies a function over the groups in a CDF
                        structure
cdfAddBaseMmCounts      Adds the number of allele A and allele B
                        mismatching nucleotides of the probes in a CDF
                        structure
cdfAddProbeOffsets      Adds probe offsets to the groups in a CDF
                        structure
cdfGetFields            Gets a subset of groups fields in a CDF
                        structure
cdfGtypeCelToPQ         Function to immitate Affymetrix'
                        gtype\_cel\_to\_pq software
cdfMergeStrands         Function to join CDF groups with the same names
cdfMergeToQuartets      Function to re-arrange CDF groups values in
                        quartets
cellindexmaps           Cell index maps for reading and writing
cellxy                  Cell coordinates and cell indices
findCdf                 Search for CDF files in multiple directories
findFiles               Finds one or several files in multiple
                        directories
invertMap               Inverts a read or a write map
read.affybatch2         Read CEL files into an Affybatch
readCdf                 Parsing a CDF file using Affymetrix Fusion SDK
readCdfCellIndices      Reads cell indices of units (probesets) in an
                        Affymetrix CDF file
readCdfGroupNames       Reads group names of a set units (probesets) in
                        an Affymetrix CDF file
readCdfHeader           Reads the header associated with an Affymetrix
                        CDF file
readCdfIsPm             Checks if cells in a CDF file are perfect-match
                        probes or not
readCdfNbrOfCellsPerUnitGroup
                        Gets the number of cells (probes) that each
                        group of each unit in a CDF file
readCdfUnitNames        Reads unit (probeset) names from an Affymetrix
                        CDF file
readCdfUnits            Reads units (probesets) from an Affymetrix CDF
                        file
readCdfUnitsWriteMap    Generates an Affymetrix cell-index write map
                        from a CDF file
readCel                 Reads an Affymetrix CEL file
readCelHeader           Parsing the header of an Affymetrix CEL file
readCelIntensities      Reads the intensities contained in several
                        Affymetrix CEL files
readCelRectangle        Reads a spatial subset of probe-level data from
                        Affymetrix CEL files
readCelUnits            Reads probe-level data ordered as units
                        (probesets) from one or several Affymetrix CEL
                        files
