Entry: affxparser-package
Aliases: affxparser-package affxparser
Keywords: package
Description: Package affxparser
URL: ../../../library/affxparser/html/affxparser-package.html

Entry: affxparserInfo
Aliases: affxparserInfo
Keywords: file
Description: Overview of the Affxparser package.
URL: ../../../library/affxparser/html/affxparserInfo.html

Entry: applyCdfGroups
Aliases: applyCdfGroups
Keywords: programming
Description: Applies a function over the groups in a CDF structure
URL: ../../../library/affxparser/html/applyCdfGroups.html

Entry: cdfAddBaseMmCounts
Aliases: cdfAddBaseMmCounts
Keywords: programming
Description: Adds the number of allele A and allele B mismatching nucleotides of the probes in a CDF structure
URL: ../../../library/affxparser/html/cdfAddBaseMmCounts.html

Entry: cdfAddProbeOffsets
Aliases: cdfAddProbeOffsets
Keywords: programming
Description: Adds probe offsets to the groups in a CDF structure
URL: ../../../library/affxparser/html/cdfAddProbeOffsets.html

Entry: cdfGetFields
Aliases: cdfGetFields
Keywords: programming
Description: Gets a subset of groups fields in a CDF structure
URL: ../../../library/affxparser/html/cdfGetFields.html

Entry: cdfGtypeCelToPQ
Aliases: cdfGtypeCelToPQ
Keywords: programming
Description: Function to immitate Affymetrix' gtype\_cel\_to\_pq software
URL: ../../../library/affxparser/html/cdfGtypeCelToPQ.html

Entry: cdfMergeStrands
Aliases: cdfMergeStrands
Keywords: programming
Description: Function to join CDF groups with the same names
URL: ../../../library/affxparser/html/cdfMergeStrands.html

Entry: cdfMergeToQuartets
Aliases: cdfMergeToQuartets
Keywords: programming
Description: Function to re-arrange CDF groups values in quartets
URL: ../../../library/affxparser/html/cdfMergeToQuartets.html

Entry: cellindexmaps
Aliases: cellindexmaps
Keywords: documentation
Description: Cell index maps for reading and writing
URL: ../../../library/affxparser/html/cellindexmaps.html

Entry: cellxy
Aliases: cellxy
Keywords: documentation
Description: Cell coordinates and cell indices
URL: ../../../library/affxparser/html/cellxy.html

Entry: findCdf
Aliases: findCdf
Keywords: file IO
Description: Search for CDF files in multiple directories
URL: ../../../library/affxparser/html/findCdf.html

Entry: findFiles
Aliases: findFiles
Keywords: file IO
Description: Finds one or several files in multiple directories
URL: ../../../library/affxparser/html/findFiles.html

Entry: invertMap
Aliases: invertMap
Keywords: file IO
Description: Inverts a read or a write map
URL: ../../../library/affxparser/html/invertMap.html

Entry: read.affybatch2
Aliases: read.affybatch2
Keywords: file IO
Description: Read CEL files into an Affybatch
URL: ../../../library/affxparser/html/read.affybatch2.html

Entry: readCdf
Aliases: readCdf
Keywords: file IO
Description: Parsing a CDF file using Affymetrix Fusion SDK
URL: ../../../library/affxparser/html/readCdf.html

Entry: readCdfCellIndices
Aliases: readCdfCellIndices
Keywords: file IO
Description: Reads cell indices of units (probesets) in an Affymetrix CDF file
URL: ../../../library/affxparser/html/readCdfCellIndices.html

Entry: readCdfGroupNames
Aliases: readCdfGroupNames
Keywords: file IO
Description: Reads group names of a set units (probesets) in an Affymetrix CDF file
URL: ../../../library/affxparser/html/readCdfGroupNames.html

Entry: readCdfHeader
Aliases: readCdfHeader
Keywords: file IO
Description: Reads the header associated with an Affymetrix CDF file
URL: ../../../library/affxparser/html/readCdfHeader.html

Entry: readCdfIsPm
Aliases: readCdfIsPm
Keywords: file IO
Description: Checks if cells in a CDF file are perfect-match probes or not
URL: ../../../library/affxparser/html/readCdfIsPm.html

Entry: readCdfNbrOfCellsPerUnitGroup
Aliases: readCdfNbrOfCellsPerUnitGroup
Keywords: file IO
Description: Gets the number of cells (probes) that each group of each unit in a CDF file
URL: ../../../library/affxparser/html/readCdfNbrOfCellsPerUnitGroup.html

Entry: readCdfUnitNames
Aliases: readCdfUnitNames
Keywords: file IO
Description: Reads unit (probeset) names from an Affymetrix CDF file
URL: ../../../library/affxparser/html/readCdfUnitNames.html

Entry: readCdfUnits
Aliases: readCdfUnits
Keywords: file IO
Description: Reads units (probesets) from an Affymetrix CDF file
URL: ../../../library/affxparser/html/readCdfUnits.html

Entry: readCdfUnitsWriteMap
Aliases: readCdfUnitsWriteMap
Keywords: file IO
Description: Generates an Affymetrix cell-index write map from a CDF file
URL: ../../../library/affxparser/html/readCdfUnitsWriteMap.html

Entry: readCel
Aliases: readCel
Keywords: file IO
Description: Reads an Affymetrix CEL file
URL: ../../../library/affxparser/html/readCel.html

Entry: readCelHeader
Aliases: readCelHeader
Keywords: file IO
Description: Parsing the header of an Affymetrix CEL file
URL: ../../../library/affxparser/html/readCelHeader.html

Entry: readCelIntensities
Aliases: readCelIntensities
Keywords: file IO
Description: Reads the intensities contained in several Affymetrix CEL files
URL: ../../../library/affxparser/html/readCelIntensities.html

Entry: readCelRectangle
Aliases: readCelRectangle
Keywords: file IO
Description: Reads a spatial subset of probe-level data from Affymetrix CEL files
URL: ../../../library/affxparser/html/readCelRectangle.html

Entry: readCelUnits
Aliases: readCelUnits
Keywords: file IO
Description: Reads probe-level data ordered as units (probesets) from one or several Affymetrix CEL files
URL: ../../../library/affxparser/html/readCelUnits.html
