&.globalSeg	and.globalSeg
&.segSet	and.segSet
-.globalSeg	not.globalSeg
-.segSet	not.segSet
.seqSize	sizeseq
and	and.segSet
and.default	and.segSet
and.globalSeg	and.globalSeg
and.segSet	and.segSet
appendSeq	appendSeq
as.data.frame.segSet	as.segSet
as.globalSeg	as.globalSeg
as.matrix.globalSeg	as.globalSeg
as.matrix.segSet	as.segSet
as.segSet	as.segSet
assemble	assemble
AtoR	AtoR
AtoT	AtoR
bankDensityProfile	bankDensityProfile
bankSummary	bankSummary
compoSeq	compos.seq
concat	concat
deleteCR	deleteCR
densityProfile	densityProfile
dnaToRna	dna.rna
exactWord	exact.word
fastaDescription	fasta.descript
freeAllSeq	free.seq
freeSeq	free.seq
GCcontent	seqSkew
GeneR	01GeneR
getAccn	getAccn
getBegSeq	getAccn
getEndSeq	getAccn
getOrfs	Allorf
getParam	getParam
getSeq	getseq
getSeqSize	getAccn
getStrand	getAccn
globals	02globals
globalSeg	02globalSeg
indexEmbl	indexfasta
indexFasta	indexfasta
indexGbk	indexfasta
insertSeq	insert
Length	size.globalSeg
Length.default	size.globalSeg
Length.globalSeg	size.globalSeg
lowerSeq	lower
makeIndex	makeIndex
mask	mask
Match	Match
Max	size.globalSeg
Max.default	size.globalSeg
Max.globalSeg	size.globalSeg
maxOrf	Allorf
Min	size.globalSeg
Min.default	size.globalSeg
Min.globalSeg	size.globalSeg
not	not.segSet
not.default	not.segSet
not.globalSeg	not.globalSeg
not.segSet	not.segSet
nSeq	free.seq
or	or.segSet
or.default	or.segSet
or.globalSeg	or.globalSeg
or.segSet	or.segSet
placeString	placestring
plot.globalSeg	plot.globalSeg
plot.profile	densityProfile
plot.segSet	as.segSet
posMaskedSeq	posMaskedSeq
posMaskedSeqFile	posMaskedSeq
randomSeq	randomSeq
range.globalSeg	as.globalSeg
readEmbl	readseq
readEmblDescript	readEmblDescript
readEmblLocation	read.gbk.location
readFasta	readseq
readGbk	readseq
readGbkLocation	read.gbk.location
readSeq	readseq
relist	relist
relistage	relist
revComp	revcomp
rnaToDna	dna.rna
RtoA	AtoR
RtoT	AtoR
seqNcbi	sequrl
seqSkew	seqSkew
seqSrs	sequrl
seqUrl	sequrl
setAccn	setAccn
setBegSeq	setAccn
setParam	setParam
setSeqSize	setAccn
setStrand	setAccn
showTable	translation
shuffleSeq	randomSeq
size	size.globalSeg
size.default	size.globalSeg
size.globalSeg	size.globalSeg
sizeSeq	sizeseq
sizeSeqEmbl	sizeseqfasta
sizeSeqFasta	sizeseqfasta
sizeSeqGbk	sizeseqfasta
sliceSegment	sliceSegment
strComp	revcomp
strCompoSeq	compos.seq
strReadEmbl	readseq
strReadFasta	readseq
strReadGbk	readseq
strTranslate	translation
strWriteFasta	write.fasta
translate	translation
TtoA	AtoR
TtoR	AtoR
unionSeg	or.segSet
upperSeq	lower
writeEmbl	writeEMBL
writeEmblComment	writeEMBL
writeEmblLine	writeEMBL
writeEmblSeq	writeEMBL
writeFasta	write.fasta
Xor	Xor.segSet
Xor.default	Xor.segSet
Xor.globalSeg	Xor.globalSeg
Xor.segSet	Xor.segSet
xorRecouvr	Xor.segSet
|.globalSeg	or.globalSeg
|.segSet	or.segSet
