R (>= 2.7.0), methods, AnnotationDbi (>= 1.41.4)
R (>= 2.7.0), methods, AnnotationDbi (>= 1.9.7)
R (>= 2.10), GenomicFeatures (>= 1.7.22),
TxDb.Hsapiens.UCSC.hg18.knownGene, org.Hs.eg.db
R (>= 2.10), GenomicFeatures (>= 1.7.22),
TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Hs.eg.db,
TxDb.Hsapiens.UCSC.hg19.knownGene
R (>= 2.7.0), methods, AnnotationDbi (>= 1.34.3)
R (>= 2.7.0), methods, AnnotationDbi (>= 1.22.5)
R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Mm.eg.db,
TxDb.Mmusculus.UCSC.mm10.knownGene
R (>= 1.6), AnnotationDbi (>= 1.17.11), methods, OrganismDbi
(>= 1.11.39), GenomicFeatures, GO.db, org.Rn.eg.db,
TxDb.Rnorvegicus.UCSC.rn5.refGene
R (>= 2.7.0), methods, AnnotationDbi (>= 1.33.0)
VariantAnnotation (>= 1.9.15), RSQLite (>= 0.11.0)
R (>= 2.10), IRanges, GenomicRanges, BSgenome (>= 1.25.6)
R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges,
BSgenome (>= 1.33.9)
R (>= 2.10), IRanges, GenomeInfoDb, GenomicRanges, BSgenome
(>= 1.25.6)
R (>= 2.7.0), methods, AnnotationDbi (>= 1.18.3)
R (>= 2.10), S4Vectors, IRanges, GenomeInfoDb, GenomicRanges,
BSgenome (>= 1.35.5)
utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb,
BSgenome
methods, utils, stats, GenomeInfoDb, AnnotationHub, digest
AnnotationDbi, DBI, RSQLite, methods, gtools
methods, utils, IRanges, GenomicRanges, BSgenome
methods, utils, S4Vectors, IRanges, GenomeInfoDb,
GenomicRanges, BSgenome
methods, utils, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
methods, utils, BiocGenerics, S4Vectors, IRanges,
GenomeInfoDb, GenomicRanges, BSgenome
BiocStyle, knitr, AnnotationHub (>= 2.7.13)
pd.hg.u95av2, pd.huex.1.0.st.v2, pd.mapping50k.xba240,
pd.hg18.60mer.expr, pd.2006.07.18.hg18.refseq.promoter,
pd.hugene.1.0.st.v1
Biostrings, BSgenome (>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
Biostrings, BSgenome.Hsapiens.UCSC.hg19,
BSgenome.Hsapiens.UCSC.hg19.masked (>= 1.3.19)