@Article{stroud_2013,
  Title                    = {Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the \emph{Arabidopsis} Methylome},
  Author                   = {Hume Stroud and Maxim V.C. Greenberg and Suhua Feng and Yana V. Bernatavichute and Steven E. Jacobsen},
  Journal                  = {Cell},
  Year                     = {2013},
  Number                   = {1-2},
  Pages                    = {352-364},
  Volume                   = {152},
  Doi                      = {10.1016/j.cell.2012.10.054},
}


@Article{krueger_2011,
  Title                    = {Bismark: a flexible aligner and methylation caller for {Bisulfite-Seq} applications},
  Author                   = {Felix Krueger and Simon R. Andrews},
  Journal                  = {Bioinformatics},
  Year                     = {2011},
  Number                   = {11},
  Pages                    = {1571-1572},
  Volume                   = {27},
  Doi                      = {10.1093/bioinformatics/btr167},
}


@Article{hebestreit_2013,
  Title                    = {Detection of significantly differentially methylated regions in targeted bisulfite sequencing data},
  Author                   = {Hebestreit, Katja and Dugas, Martin and Klein, Hans-Ulrich},
  Journal                  = {Bioinformatics},
  Year                     = {2013},
  Number                   = {13},
  Pages                    = {1647-1653},
  Volume                   = {29},
  Doi                      = {10.1093/bioinformatics/btt263},
}

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  Title                    = {Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing},
  Author                   = {Yoav Benjamini and Yosef Hochberg},
  Journal                  = {Journal of the Royal Statistical Society. Series B (Methodological)},
  Year                     = {1995},
  Number                   = {1},
  Pages                    = {289-300},
  Volume                   = {57},
  Url                      = {http://www.jstor.org/stable/2346101}
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@Article{ferrari_2004,
  Title                    = {Beta {{Regression}} for {{Modelling Rates}} and {{Proportions}}},
  Author                   = {Ferrari, Silvia and Cribari-Neto, Francisco},
  Journal                  = {Journal of Applied Statistics},
  Year                     = {2004},
  Number                   = {7},
  Pages                    = {799-815},
  Volume                   = {31},
  Url                      = {http://www.jstor.org/stable/2346101},
  Doi                      = {10.1080/0266476042000214501}
}
