xcms-deprecated {xcms} | R Documentation

## Deprecated functions in package ‘xcms’

### Description

These functions are provided for compatibility with older versions of ‘xcms’ only, and will be defunct at the next release.

### Details

The following functions/methods are deprecated.

- `xcmsPapply`: this function is no longer available and the use of `bplapply` is suggested.

- `profBin`, `profBinM`, `profBinLin`, `profBinLinM`, `profBinLinBase`, `profBinLinBaseM` have been deprecated and `binYonX` in combination with `imputeLinInterpol` should be used instead.

- `extractChromatograms`: replaced by `chromatogram`.

- `plotChromatogram`: replaced by `plot` method for `Chromatogram` or `Chromatograms` objects.

- `extractMsData`: replaced by `as(x, "data.frame")`.

- `plotMsData`: replaced by `plot(x, type = "XIC")`.

[Package xcms version 3.2.0 Index]