ESS                     Effective sample size
MArrayLM2-class         Class MArrayLM2.
[.MArrayLM2             Subseting for MArrayLM2
as.data.frame,varPartResults-method
                        Convert to data.frame
as.matrix,varPartResults-method
                        Convert to matrix
calcVarPart             Compute variance statistics
canCorPairs             canCorPairs
colinearityScore        Collinearity score
dream                   Differential expression with linear mixed model
eBayes,MArrayLM2-method
                        eBayes for MArrayLM2
extractVarPart          Extract variance statistics
fitExtractVarPartModel
                        Fit linear (mixed) model, report variance
                        fractions
fitVarPartModel         Fit linear (mixed) model
getContrast             Extract contrast matrix for linear mixed model
getVarianceComponents   Extract variance terms
ggColorHue              Default colors for ggplot
plotCompareP            Compare p-values from two analyses
plotCorrMatrix          plotCorrMatrix
plotCorrStructure       plotCorrStructure
plotPercentBars         Bar plot of variance fractions
plotStratify            plotStratify
plotStratifyBy          plotStratifyBy
plotVarPart             Violin plot of variance fractions
residuals,VarParFitList-method
                        Residuals from model fit
sortCols                Sort variance partition statistics
varPartConfInf          Linear mixed model confidence intervals
varPartDEdata           Simulation dataset for dream example
varPartData             Simulation dataset for examples
