taSNP {traseR} | R Documentation

## trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser

### Description

A GRange object `taSNP` contains trait-associated SNPs from dbGaP and NHGRI downloaded from Association Results Browser.

### Usage

    data(taSNP)

### Value

The data frame `taSNP` contains the following columns

`Trait` | Trait
`Trait Class` | Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class
`SNP_ID` | SNP rs number
`p.value` | GWAS SNP p-value
`seqnames` | Chromosome
`ranges` | Chromosome position
`Context` | SNP functional class
`GENE_NAME` | Nearest gene name
`GENE_START` | Gene start genomic position
`GENE_END` | Gene end genomic position
`GENE_STRAND` | Gene strand

### Author(s)

Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>

[Package traseR version 1.10.0 Index]