AbstractTopDownSet-class
                        The AbstractTopDownSet class
FragmentViews-class     The FragmentViews class
NCBSet-class            The NCBSet class
TopDownSet-class        The TopDownSet class
createTngFusionMethFiles
                        Windows specific functions.
defaultMs1Settings      Settings for MS1/2 parameters.
readTopDownFiles        Read top-down files.
tds                     TopDownSet Example Data
topdownr-package        Investigation of Fragmentation Conditions in
                        Top-Down Proteomics
writeMethodXmls         Create Orbitrap Fusion method.xml files.
