ratioIntersectMethod {similaRpeak} | R Documentation

## Ratio between the intersection area of two profiles and the total area covered by those profiles

### Description

Calculate and return the ratio between the intersection area of two profiles and the total area covered by those profiles. If the total area is inferior to the threshold, the function returns `NA`.

### Usage

    ratioIntersectMethod(profile1, profile2, threshold = 1)

### Arguments

`profile1` | a `vector` of `numeric` values, the first profile containing the alignment depth for each position. The `profile1` and `profile2` should have the same length.
`profile2` | a `vector` of `numeric` values, the second profile containing the alignment depth for each position. The `profile1` and `profile2` should have the same length.
`threshold` | a `numeric`, the minimum total area value accepted to calculate a ratio.

### Value

The calculated ratio or `NA` if the total area is inferior to the threshold.

### Author(s)

Astrid Deschenes, Elsa Bernatchez

### See Also

- `MetricFactory` for using the recommanded interface to calculate all available metrics separately or togheter.

[Package similaRpeak version 1.12.0 Index]