seqbias.load {seqbias} | R Documentation

## Loading seqbias models

### Description

Loads a seqbias model from a file written with 'seqbias.save'.

### Usage

    seqbias.load(ref_fn, model_fn)

### Arguments

`ref_fn` | filename of a reference sequence against which the reads are aligned in FASTA format.
`model_fn` | filename of a saved seqbias model

### Details

A large seqbias model can take some time (several minutes) to fit. It is often preferable to do this just once. This function load the model from a file in YAML format, having been written with 'seqbias.save'.

### Value

A seqbias class.

### Author(s)

Daniel Jones dcjones@cs.washington.edu

### See Also

`seqbias.save`

### Examples

      reads_fn <- system.file( "extra/example.bam", package = "seqbias" )
      ref_fn <- system.file( "extra/example.fa", package = "seqbias" )

      sb <- seqbias.fit( ref_fn, reads_fn )

      seqbias.save( sb, "my_seqbias_model.yml" )

      # load sometime later
      sb <- seqbias.load( ref_fn, "my_seqbias_model.yml" )

[Package seqbias version 1.28.0 Index]