getPfam {readat} | R Documentation

## Get PFAM IDs by AptamerId

### Description

Gets the PFAM Ids and descriptions associated with SomaLogic aptamer IDs.

### Usage

    getPfam(aptamerIds = NULL, simplify = FALSE)

### Arguments

`aptamerIds` | A character vector of SomaLogic aptamer IDs, or `NULL` to use all aptamer IDs.
`simplify` | Logical. Should the output be collapsed into a single data.frame?

### Value

A list of data frames. The names of the list are the input SeqIds, and the data frame associated with that element contains:

EntrezGeneId

  Character. EntrezGene IDs for the gene that produces the target protein.

PfamId

  Character. PFAM ID for a property of the target protein.

PfamDescription

  Character. Description of a PFAM protein property.

### Examples

    # Each AptamerId may have one, many, or zero associated PFAM descriptions
    getPfam(c("2278-61", "4703-87", "4916-2"))

    # Get everything in the 1310 and 1129 panels.
    ## Not run:
    getPfam()

    ## End(Not run)

[Package readat version 1.6.0 Index]