getbipartitegraphInfo {pwOmics} | R Documentation

## Get TF-target gene information for the consensus graph.

### Description

Get TF-target gene information for the consensus graph.

### Usage

    getbipartitegraphInfo(data_omics, tps, updown = FALSE, phospho = TRUE)

### Arguments

`data_omics` | OmicsData object.
`tps` | integer specifying current timepoint under consideration.
`updown` | boolean value; TRUE in case up- and downregulation should be checked individually for intersection. Type of checking is defined with parameter 'phospho'.
`phospho` | boolean value; TRUE in case up- and downregulation should be checked based on provided downstream phosphoprotein influence from identifyPR function; FALSE in case up- and downregulation should be checked for without phosphoprotein database knowledge. Default is TRUE.

### Value

list of transcription factor target gene interactions.

[Package pwOmics version 1.12.0 Index]