parseSuppaEvent {psichomics} | R Documentation

## Parses splicing events of a specific event type from SUPPA

### Description

Parses splicing events of a specific event type from SUPPA

### Usage

    parseSuppaEvent(event)

### Arguments

`event` | Character vector: Splicing event attributes and junction positions

### Details

More information about SUPPA available at https://bitbucket.org/regulatorygenomicsupf/suppa

The following event types are available to be parsed:

- SE (skipped exon)

- RI (intron retention)

- MX (mutually exclusive exons)

- A5 (alternative 5' splice site)

- A3 (alternative 3' splice site)

- AL (alternative last exon)

- AF (alternative first exon)

### Value

List with the event attributes (chromosome, strand, event type and the position of the exon boundaries)

### Note

It only allows to parse one event type at once.

### Examples

    event <- "ENSG00000000419;A3:20:49557492-49557642:49557470-49557642:-"
    psichomics:::parseSuppaEvent(event)

[Package psichomics version 1.6.2 Index]