prepareFirebrowseArchives {psichomics} | R Documentation

## Prepares Firebrowse archives in a given directory

### Description

Checks Firebrowse archives' integrity using the MD5 files, extracts the content of the archives, moves the content to newly-created folders and removes the original downloaded archives.

### Usage

    prepareFirebrowseArchives(archive, md5, folder, outdir)

    prepareFirehoseArchives(archive, md5, folder, outdir)

    prepareTCGAarchives(archive, md5, folder, outdir)

### Arguments

`archive` | Character: path to downloaded archives
`md5` | Character: path to MD5 files of each archive
`folder` | Character: master directory where every archive will be extracted
`outdir` | Character: subdirectories where to move the extracted content

### Value

Invisible TRUE if successful

### Examples

    file <- paste0(
        "~/Downloads",
        "ACC/20151101/gdac.broadinstitute.org_ACC.",
        "Merge_Clinical.Level_1.2015110100.0.0.tar.gz")
    md5 <- paste0(file, ".md5")
    ## Not run:
    prepareFirebrowseArchives(archive = file, md5 = paste0(file, ".md5"))

    ## End(Not run)

[Package psichomics version 1.6.2 Index]