plethy-package {plethy} | R Documentation

## R framework for exploration and analysis of respirometry data

### Description

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

### Details

Package: | plethy
Version: | 0.99.4
Date: | 2013-4-26
Imports: | Streamer, DBI, RSQLite, methods, IRanges, reshape2, batch
Depends: | R (>= 3.0.0)
Suggests: | RUnit, BiocGenerics
License: | GPL-3
biocViews: | DataImport, biocViews, Infastructure, DataRepresentation,TimeCourse
Collate: | BuxcoDB.R RetList.R buxco_db_v2.R dep_parser.R utilities.R
Packaged: | 2013-08-01 21:02:18 UTC; bottomly
Built: | R 3.0.1; ; 2013-08-01 21:02:29 UTC; unix

Index:

    BuxcoDB-class           Class '"BuxcoDB"'
    dbImport                Import data into a BuxcoDB database
    parse.buxco             Functions for parsing Buxco respirometry data
    plethy-package          R framework for exploration and analysis of
                            respirometry data
    buxco.sample.data.path  Path to a sample Buxco output file
    sample.db.path          Path to a sample BuxcoDB database

Further information is available in the following vignettes:

`plethy` | plethy (source, pdf)

### Author(s)

Daniel Bottomly, Marty Ferris

Maintainer: Daniel Bottomly <bottomly@ohsu.edu>

### References

www.buxco.com

### Examples

    tmp_db <- tempfile()

    bux.db <- parse.buxco(file.name=buxco.sample.data.path(), db.name = tmp_db)

    head(retrieveData(bux.db))

    bux.db <- makeBuxcoDB(tmp_db)

    samples(bux.db)
    variables(bux.db)

[Package plethy version 1.18.0 Index]