getters for the epheno object {phenoTest} | R Documentation

## Getters for the epheno object:

### Description

`getFc` gets the fold changes. `getHr` gets the hazard ratios. `getMeans` gets the means. `getPvals` gets the p values. `getPostProbs` get the posterior probabilities. `getSignif` gets the pvalues or the posterior probabilities depending on the approach (frequentist or bayesian) that was used when the epheno object was created. `getSummaryDif` gets fold changes and hazard ratios. `lofFcHr` gets the fold changes and hazard ratios after log scaling. `p.adjust.method` gets the p value adjustment method that was used when creating the object. `phenoClass` returns a data.frame telling the class (ordinal, continuous, categorical or survival) of each phenotype. `phenoNames` gets the phenotype names. `approach` gets the approach that was used (either frequentist or bayesian).

### Usage

    getFc(x)
    getHr(x)
    getMeans(x)
    getSignif(x)
    getPvals(x)
    getPostProbs(x)
    getSummaryDif(x)
    logFcHr(x)
    p.adjust.method(x)
    phenoClass(x)
    phenoNames(x)
    approach(x)

### Arguments

`x` | `epheno` object

### Author(s)

Evarist Planet

[Package phenoTest version 1.28.0 Index]