epheno {phenoTest} | R Documentation

## epheno object.

### Description

Object obatined with ExpressionPhenoTest function.

### Usage

    data(epheno)

### Format

The format is: Formal class 'epheno' [package "phenoTest"] with 8 slots ..@ p.adjust.method : chr "none" ..@ assayData :<environment: 0x1050d5a78> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 5 obs. of 1 variable: .. .. .. ..$ labelDescription: chr [1:5] NA NA NA NA ... .. .. ..@ data :'data.frame': 12 obs. of 5 variables: .. .. .. ..$ phenoName : Factor w/ 3 levels "lymph.node.status",..: 3 3 3 3 3 1 1 1 2 3 ... .. .. .. ..$ phenoClass: Factor w/ 3 levels "categorical",..: 2 2 2 2 2 1 1 1 3 2 ... .. .. .. ..$ phenoType : Factor w/ 3 levels "mean","pval",..: 1 1 1 3 3 1 1 3 3 2 ... .. .. .. ..$ meanLabel : Factor w/ 5 levels "[45.2,49.2)",..: 1 2 3 NA NA 4 5 NA NA NA ... .. .. .. ..$ survTime : Factor w/ 1 level "Months2Relapse": NA NA NA NA NA NA NA NA 1 NA ... .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 1000 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other : list() .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 0 0 ..@ annotation : chr "hgu133a" ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 12 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 4 .. .. .. ..$ : int [1:3] 2 12 0 .. .. .. ..$ : int [1:3] 2 10 0 .. .. .. ..$ : int [1:3] 1 3 0 .. .. .. ..$ : int [1:3] 1 0 0

### Examples

    data(epheno)
    ## maybe str(epheno) ; plot(epheno) ...

[Package phenoTest version 1.28.0 Index]