summary.gseaSignificance {phenoTest} | R Documentation

## Obtain a data.frame with the pvalues and fdr for all signatures and variables of a gseaSignificanceSign or gseaSignificanceVar object.

### Description

Builds a data.frame object that can easily be written to a csv file containing the ES, NES, pval.ES, pval.NES and FDR.

### Usage

    summary.gseaSignificanceSign(object,...)

### Arguments

`object` | object of class `gseaSignificanceSign` or `gseaSignificanceVar`.
`...` | Arguments to be passed to `summary`.

### Author(s)

Evarist Planet

### References

Aravind Subramanian, (October 25, 2005) Gene Set Enrichment Analysis. www.pnas.org/cgi/doi/10.1073/pnas.0506580102

### Examples

    #for examples see the help file of gseaSigntaures: ?gseaSignatures

[Package phenoTest version 1.28.0 Index]