limmaAnalysis {phantasus} | R Documentation

## Differential Expression analysis.

### Description

`limmaAnalysis` performs differential expression analysis from limma package and returns a ProtoBuf-serialized resulting de-matrix.

### Usage

    limmaAnalysis(es, rows = c(), columns = c(), fieldValues)

### Arguments

`es` | ExpressionSet object. It should be normalized for more accurate analysis.
`rows` | Vector of specified rows' indices (optional).
`columns` | Vector of specified columns' indices (optional).
`fieldValues` | Vector of comparison values, mapping categories' names to columns/samples (must be equal length with columns' vector if specified).

### Value

Name of the file containing serialized de-matrix.

### Examples

    ## Not run:
    data(es)
    limmaAnalysis(es, fieldValues = c("A", "A", "A", "B", "B"))

    ## End(Not run)

[Package phantasus version 1.0.2 Index]