# Outlier profile and pathway analysis in R

## Documentation for package ‘oppar’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

oppar-package | oppar: A package for outlier profile and pathway analysis.
$-method | A S4 class for the output of OPPAR main function, opa.
bcm | Breast cancer metastases from different anatomical sites
eset | Tomlins et al. Prostate Cancer data (GEO: GSE6099)
getSampleOutlier | Retrieving outlier genes in samples
getSampleOutlier-method | Retrieving outlier genes in samples
getSubtypeProbes | Retrieving outlier genes from a group of related samples
getSubtypeProbes-method | Retrieving outlier genes from a group of related samples
gsva | gsva
gsva-method | gsva
maupin | Maupin's TGFb data and a TGFb gene signature
opa | Outlier profile Analysis
opa-method | Outlier profile Analysis
oppar | oppar: A package for outlier profile and pathway analysis.
OPPARList-class | A S4 class for the output of OPPAR main function, opa.
show-method | A S4 class for the output of OPPAR main function, opa.