mpraSetExample {mpra} | R Documentation

## Example data for the mpra package.

### Description

Example data for the MPRA package. The package contains data both at the barcode level and aggregated over barcodes. The data comes from a study by Inoue et al that compares episomal and lentiviral MPRA.

### Usage

    data("mpraSetExample")
    data("mpraSetAggExample")

### Format

An `MPRASet`.

### Details

`mpraSetExample` contains barcode level information. `mpraSetAggExample` contains count information where the counts have been summed over barcodes for each element.

### Source

A script from creating the two datasets are supplied in the `scripts` folder of the package. The data is taken from the GEO submission associated with the paper (see references), specifically GSE83894.

### References

Inoue, Fumitaka, Martin Kircher, Beth Martin, Gregory M. Cooper, Daniela M. Witten, Michael T. McManus, Nadav Ahituv, and Jay Shendure. A Systematic Comparison Reveals Substantial Differences in Chromosomal versus Episomal Encoding of Enhancer Activity. Genome Research 2017, 27(1):38-52. doi: 10.1101/gr.212092.116.

### Examples

    data(mpraSetAggExample)

[Package mpra version 1.2.0 Index]