Motif-class             Motif objects
YY1.control             Background for YY1 ChIP-Seq peaks in HepG2
YY1.peak                YY1 ChIP-Seq peaks in HepG2
ctcf.motifs             CTCF motifs predicted by motifRG
findMotif               De-novo discovery of distriminative motifs
findMotifFasta          Wrapper function for findMotif using fasta
                        input
findMotifFgBg           Wrapper function for findMotif using two
                        sequence datasets
getSequence             Fetch genomic sequences from GRanges Object
motifLatexTable         create of table of motifs
plotMotif               plot motif sequence matches
refinePWMMotif          create a PWM (Position Weight Model) model
                        given a initial set of motif matches and input
                        sequences
refinePWMMotifExtend    create an extended PWM (Position Weight Model)
                        model given a initial set of motif matches and
                        input sequences
summaryMotif            summarize a list of motifs
