summarize_phyloseq {microbiome} | R Documentation

## Summarize phyloseq object

### Description

Prints basic information of data.

### Usage

    summarize_phyloseq(x)

### Arguments

`x` | Input is a `phyloseq-class` object.

### Details

The summarize_phyloseq function will give information on weather data is compositional or not, reads (min. max, median, average), sparsity, presence of singletons and sample variables.

### Value

Prints basic information of `phyloseq-class` object.

### Author(s)

Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com

### Examples

    data(dietswap)
    summarize_phyloseq(dietswap)

[Package microbiome version 1.2.1 Index]