activeNetScoreHTML {maigesPack} | R Documentation

## Save HTML file with scores and p-values from functional gene networks classification

### Description

This function takes an object of class `maigesActNet`, that is generated using the function `activeNet` to do functional classification of gene groups, and save an HTML file with global score for genes separated by gene groups (modules).

### Usage

    activeNetScoreHTML(mod=NULL, dir="./", fileSave="scores")

### Arguments

`mod` | object of class `maigesActNet`, resulted from functional classification of gene networks.
`dir` | character string giving the folder to save the file.
`fileSave` | string giving the file name. You don't need to put the extension 'html', it will be put automatically.

### Value

This function generates an HTML file and don't return any R value or object.

### Author(s)

Gustavo H. Esteves <gesteves@vision.ime.usp.br>

### See Also

`plot.maigesActNet`, `activeNet`

### Examples

    ## Loading the dataset
    data(gastro)

    ## Doing functional classification of gene networks for sample Label
    ## given by 'Tissue'
    gastro.net = activeNet(gastro.summ, sLabelID="Tissue")

    activeNetScoreHTML(gastro.net)

[Package maigesPack version 1.44.0 Index]