geneCloud {maftools} | R Documentation

## Plots wordcloud.

### Description

Plots word cloud of mutated genes or altered cytobands with size proportional to the event frequency.

### Usage

    geneCloud(input, minMut = 3, col = NULL, top = NULL,
      genesToIgnore = NULL, ...)

### Arguments

`input` | an `MAF` or `GISTIC` object generated by `read.maf` or `readGistic`
`minMut` | Minimum number of samples in which a gene is required to be mutated.
`col` | vector of colors to choose from.
`top` | Just plot these top n number of mutated genes.
`genesToIgnore` | Ignore these genes.
`...` | Other options passed to `wordcloud`

### Value

nothing.

### Examples

    laml.input <- system.file("extdata", "tcga_laml.maf.gz", package = "maftools")
    laml <- read.maf(maf = laml.input, useAll = FALSE)
    geneCloud(input = laml, minMut = 5)

[Package maftools version 1.6.15 Index]