SymmetricPairKernel-class {kebabs} | R Documentation

## Symmetric Pair Kernel Class

### Description

Symmetric Pair Kernel Class

### Details

Instances of this class represent a kernel object for the symmetric pair kernel. The kernel does not compute similarity between single samples but between two pairs of samples based on a regular sequence kernel for single samples. The class is derived from SequenceKernel.

### Slots

`siKernel`

  single instance kernel

`kernelType`

  type of pair kernel

`r`

  exponent (for details see gappyPairKernel)

### Author(s)

Johannes Palme <kebabs@bioinf.jku.at>

### References

http://www.bioinf.jku.at/software/kebabs
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

[Package kebabs version 1.14.0 Index]