CrossValidationResult-class {kebabs} | R Documentation

## Cross Validation Result Class

### Description

Cross Validation Result Class

### Details

Instances of this class store the result of cross validation.

### Slots

`cross`

  number of folds for cross validation

`noCross`

  number of CV runs

`groupBy`

  group assignment of samples

`perfParameters`

  collected performance parameters

`outerCV`

  flag indicating outer CV

`folds`

  folds used in CV

`cvError`

  cross validation error

`foldErrors`

  fold errors

`noSV`

  number of support vectors

`ACC`

  cross validation accuracy

`BACC`

  cross validation balanced accuracy

`MCC`

  cross validation Matthews correlation coefficient

`AUC`

  cross validation area under the ROC curve

`foldACC`

  fold accuracy

`foldBACC`

  fold balanced accuracy

`foldMCC`

  fold Matthews correlation coefficient

`foldAUC`

  fold area under the ROC curve

`sumAlphas`

  sum of alphas

### Author(s)

Johannes Palme <kebabs@bioinf.jku.at>

### References

http://www.bioinf.jku.at/software/kebabs
J. Palme, S. Hochreiter, and U. Bodenhofer (2015) KeBABS: an R package for kernel-based analysis of biological sequences. Bioinformatics, 31(15):2574-2576, 2015. DOI: 10.1093/bioinformatics/btv176.

[Package kebabs version 1.14.0 Index]