46b5ced3517b929ab2fe4cae253054ed *CITATION
a19f23f233776767d08beb4ae937d2fb *DESCRIPTION
a27543e4f018e7b35b2638ed8fdb14f4 *INDEX
4b09137084a5033ca3e29836e4f795b8 *Meta/Rd.rds
ef31537a3b07b79cc5498ea087491ad0 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
29a11e62b237197c3d7e42440da6ca3b *Meta/hsearch.rds
3ee1ecb643d2a7f8217c5bbbf5b70f5b *Meta/links.rds
804ce4c1be60c62f626959e2d846c8af *Meta/nsInfo.rds
8cd9946652fa6f6d770186e5584322a3 *Meta/package.rds
c7bccbe3a0685d0cc832939ea5e59d81 *Meta/vignette.rds
21d7f372069ba69a1a34e655352e3d04 *NAMESPACE
2507a5a02ee2af6b5995fb68b830916b *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/isobar
8b9ba67c79744ec1a4fb84cb799a8421 *R/isobar.rdb
a959c692aae2cec53def6aa29b3543a4 *R/isobar.rdx
c7a5a70ebdebbb43c2e1ca9d1b0adee9 *data/datalist
b8b88836959bc4075f53f0c451dfe60b *data/ib_phospho.rda
0958cc4c886c489dda421ade8b7bddab *data/ibspiked_set1.rda
4a6ea3178279aefddcf6eb26f500e201 *data/ibspiked_set2.rda
20790378db1e8fc09a6ec329b91f2954 *data/noise.model.hcd.rda
163a311cc92f83bdf9f4c42e9128c9c5 *doc/index.html
3657e0dbdcb8fc8951e2fe604c35be02 *doc/isobar-devel.R
00750d7e0d90fea9eb3f348cb9735e75 *doc/isobar-devel.Rnw
cbc2f6f2181cff51ac5ec961767ce7d1 *doc/isobar-devel.pdf
138dec290f8cf6f67c252ca3c007dd16 *doc/isobar-ptm.R
314da331a6a3811b2af10802037391c8 *doc/isobar-ptm.Rnw
a66b65c54a06a5373ca3359a032802f5 *doc/isobar-ptm.pdf
9a8eca9752762ff7486109e91215953c *doc/isobar-usecases.R
545d3ef59ef5f85f4b4da438f31e3e86 *doc/isobar-usecases.Rnw
de230663b4aa45c31801908ed86bdf05 *doc/isobar-usecases.pdf
2fa53e5ade6daf8d58b4094f8387d96d *doc/isobar.R
50688a906ae3121b2a05c3c749534b3f *doc/isobar.Rnw
b9cf52a0e3d7da6cf32f735880248ef3 *doc/isobar.pdf
67db5bcb1b2f3e7f10d8ac9f0fa01df4 *help/AnIndex
c8aa03cba90eeead5e118bcf07a988c6 *help/aliases.rds
0e4c0297bb0e8e6a3ea655853a71805c *help/isobar.rdb
2a9f4790722a3cc76fdf2a22d8de3ac9 *help/isobar.rdx
e116e017536603d64d166d92d4fd3442 *help/paths.rds
34c3eb242656308150c5726cf0ebb720 *html/00Index.html
ba60b63424a44bc198352a0204eb5513 *html/IBSpectra-class.html
260b19844bdcc1da062204bdf5495778 *html/NoiseModel-class.html
a025a40380bc3035e0f75578ee5d29be *html/ProteinGroup-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f8546a698e3e7ee1e4a53fb2c856d68e *html/TlsParameter-class.html
611de32ee90f316a9f4384a5548381b0 *html/Tlsd-class.html
a5da70ea36651a3076956b10d64ac6f0 *html/calc.delta.score.html
8d4455f12a998160ae6ab7d9d0cda486 *html/calc.startpos.html
517c1933a82f9095f4cf7f15d993634c *html/calculate-pvalues.html
55bc31bbf80f585e92cce9ac103fc95e *html/calculate.dNSAF.html
0f139571ee4f8819603669ee2b0645aa *html/calculate.emPAI.html
d542c0e2c59a4e18db27fdff91e8f815 *html/correct.peptide.ratios.html
99575b6f10bb51f9f3ed1f8b6daceaf8 *html/distr-methods.html
aff9e92e76cc00189235517d8d84de45 *html/fit-distr.html
1d2f55635126c69929188ca874b7cc90 *html/getPeptideModifContext.html
883b2b12d1719e6cf40cd99a7298b30b *html/getPhosphoRSProbabilities.html
6e4cf9fcdcf917bbba5c83dd0c9fa04b *html/getPtmInfo.html
c2d6046a057f036a92a3b3ce94332889 *html/groupMemberPeptides.html
9082d531bca1e0c2b827e20847ad3707 *html/human.protein.names.html
853af46506217d7da154769fdf802154 *html/isobar-analysis.html
e92ed80b4c5bfbb52af01a7ed34e60f7 *html/isobar-data.html
7bfaf27e632f724069e5d3ed8527f0a1 *html/isobar-import.html
d6602f23fef282ee3ab644be3e3ad2eb *html/isobar-log.html
05378dc59e699d07e8b6fbce556e2411 *html/isobar-package.html
bd3b9e63c18db2469238ebb2f95642c3 *html/isobar-plots.html
80b739c866d4bc2a3b18f8ebb26408bc *html/isobar-preprocessing.html
7e5163cf55df2b2dcc49009eec968aae *html/isobar-reports.html
02f1102cb0d26bac16df5c7224ed7313 *html/maplot.protein.html
0d4a6c270f60d621a9dcafe8ab3a93e6 *html/number.ranges.html
a9828f07b6757ef2134fd97361ce483e *html/observedKnownSites.html
67819f597757984424d3b6b21d032777 *html/peptide.count.html
50d3377dc6882126b001d7b8071c72a8 *html/proteinInfo-methods.html
40216907ecfb3d0648a16fd3dee4edda *html/proteinNameAndDescription.html
4e31c577d7a646c3f8e15c3ead13dea1 *html/ratio-summ.html
929f42d2749e3aa16482b20391693adb *html/ratiosReshapeWide.html
33c1560355f78ff70485c79f83bad74d *html/reporter.protein-methods.html
45d46f3ddd7ad0daf4c2938be1d6950f *html/sanitize.html
cf40d9957b7463edac3e0523fef8c42a *html/shared.ratios.html
9345b12f84f1f1b7f8331e5d12db87ee *html/shared.ratios.sign.html
3c3decb1b02029b07477fcf7804674ce *html/specificities.html
6747ebf1da6eeb11e23d3ae30fbe1627 *html/spectra.count2.html
1967815e1a658f2c702da7aa9af7753e *html/subsetIBSpectra.html
bb043827937565847417981d2a22d38e *html/utils.html
27e71a19b95c27d1670a3aa46f0656c7 *html/writeHscoreData.html
f7e324aa7f8792e08610d2feb8c54c11 *html/writeIBSpectra.html
716d7b0757874cf8599448f4bee9810e *pl/mascotParser.ini
2cca5297323fc2a74017ecd7aea853c7 *pl/mascotParser2.pl
2584f52a48c4f9aa1f66a70a34f49ff9 *pl/mascotParserDelta_defunct.pl
1fd85c5cbbfe521feea3c2b7b58e6d41 *pl/modifconv.csv
161d85c51a7f2283c3d0b84e0429d1d7 *pl/msgfpParser.R
3228f3eec6684af3e5723965b9ea74fa *pl/parsersConfig.xml
91010e7dc5499a269a1afdecbaf810b9 *pl/pidresParser.ini
b2220fae9a1b8bc8bc6e7e00ab96f2da *pl/pidresParser2.pl
4cf5076ba456ba392fa144b2ae228e3a *pl/psx2tab2.pl
005ecccf798ee34040ca6d6219f47ee9 *pl/tab2psx.pl
4f2a0927cd8506c4eea0beef0120e954 *pl/tab2xls.pl
b602208b7fa19d3eb2368c7ce7bb5dfa *pl/tab2xlsx.pl
ce7394b1801aa8b2e9c3f89466c5e55f *report/create_ibspectra.R
847bd2f19c315fcef0d86ee5183c9fc8 *report/create_meta_report.R
1bb294af0062a7fdeffce36e51d3ee23 *report/create_proteingroup.R
0b83a654ee337fa19cc2468561549a6d *report/create_reports.R
4ac135db1b729216469fbb60408af484 *report/isobar-analysis.Rnw
4e4331c28fbbcfb0001d3dab0d66ee14 *report/isobar-qc.Rnw
b29144b3a608f3d62852d92b59aff480 *report/meta-properties.R
67028806951e58f04939bf9d42db0032 *report/properties.R
b272169b767e3f91437feb211b3b1c53 *report/report-utils.tex
