plotChrRegions {htSeqTools} | R Documentation

## Plot chromosomal regions of interest

### Description

Produces a plot with all chromosomes for a given organism, marking regions of interest in a user-specified color.

### Usage

    plotChrRegions(regions, chrLength, markColor='red', ...)

### Arguments

`regions` | `RangedData` object with chromosome, start and end positions (chromosome must be stored in `space(regions)`.
`chrLength` | Named integer vector with chromosome lengths in base pairs.
`markColor` | Color to be used to mark the regions in the chromosome.
`...` | Further parameters passed on to `plot`.

### Value

This function produces a plot.

### Examples

    set.seed(1)
    chr <- rep(c('chr1','chr2'),each=10)
    chrLength <- c(chr1=10000,chr2=5000)
    st <- c(runif(10,1,10000),runif(10,1,5000))
    regions <- RangedData(IRanges(st,st+50),space=chr)

    plotChrRegions(regions,chrLength=chrLength)

[Package htSeqTools version 1.28.3 Index]