chr1ASW1000G {hapFabia} | R Documentation

## Example genotype data in `vcf` format

### Description

Genotype data in `vcf` format. Contains `chr1ASW1000G` of class character.

A `vcf` file is produced by `write(chr1ASW1000G,file="chr1ASW1000G.vcf")`.

### Usage

    chr1ASW1000G

### Format

String `chr1ASW1000G` of class character.

### Source

1000Genomes phase 1 release v3; chromosome 1, only ASW and only few SNVs.

### References

S. Hochreiter et al., ‘FABIA: Factor Analysis for Bicluster Acquisition’, Bioinformatics 26(12):1520-1527, 2010.

### See Also

`IBDsegment-class`, `IBDsegmentList-class`, `analyzeIBDsegments`, `compareIBDsegmentLists`, `extractIBDsegments`, `findDenseRegions`, `hapFabia`, `hapFabiaVersion`, `hapRes`, `chr1ASW1000G`, `IBDsegmentList2excel`, `identifyDuplicates`, `iterateIntervals`, `makePipelineFile`, `matrixPlot`, `mergeIBDsegmentLists`, `mergedIBDsegmentList`, `plotIBDsegment`, `res`, `setAnnotation`, `setStatistics`, `sim`, `simu`, `simulateIBDsegmentsFabia`, `simulateIBDsegments`, `split_sparse_matrix`, `toolsFactorizationClass`, `vcftoFABIA`

[Package hapFabia version 1.22.0 Index]