plotMutationSpectrum {h5vc} | R Documentation

## Plotting a mutation spectrum

### Description

This function generates a mutation spectrum plot from a mutation spectrum returned by a call to `mutationSPectrum`

### Usage

    plotMutationSpectrum( ms, plotCounts = TRUE )

### Arguments

`ms` | A mutation spectrum as returned by `mutationSpectrum`
`plotCounts` | Boolean flag specifying whether `ms` contains one row per variant (default) or already contains summarized counts per type of mutation

### Details

The plot is inspired by the one shown in figure 1b of `Signatures of mutational processes in human cancer -- Alexandrov et. al.`

### Value

A ggplot object containing the mutation spectrum plot

### Author(s)

Paul Pyl

### Examples

      library(h5vc)
      tallyFile <- system.file( "extdata", "example.tally.hfs5", package = "h5vcData" )
      data( "example.variants", package = "h5vcData" )
      plotMutationSpectrum( mutationSpectrum( variantCalls, tallyFile, "/ExampleStudy" ) )

[Package h5vc version 2.14.0 Index]